MOMD:
Mouse Oral Microbiome Database
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MOMD Genome Explorer
Selected genome:
Shigella flexneri
19428wH2_1568
Change genome:
Available genomes
1. Actinomyces bowdenii WMus004.1
2. Bacteroides acidifaciens 19428wH3_P2318
3. Bacteroides acidifaciens 8_33DSS_C5_S8
4. Citrobacter koseri 19428wH4_BL23
5. Dysgonomonas mossii 19428wE4_P11
6. Enterococcus gallinarum 19428wB3_C2
7. Enterococcus gallinarum ENT.1
8. Escherichia coli 19428wD4_HM13
9. Gemella palaticanis CIP106318T.1
10. Gemella sp. 19428wG2_WT2a
11. Gemella sp. GH3.1
12. Gemella sp. GL1.1
13. Granulicatella sp. 19428wC4_WM01
14. Jeotgalicoccus nanhaiensis 19428wE5_W307
15. Lactobacillus johnsonii 19428wE2_CC3
16. Lactobacillus murinus LAC.1
17. Ligilactobacillus murinus 19428wF2_HT12
18. Ligilactobacillus murinus 2_2BalbC1BO2_S2
19. Mammaliicoccus lentus 19428wC1_HT5
20. Mammaliicoccus lentus 19428wG1_AE2
21. Mammaliicoccus lentus 3_3BalbC2O2_S3
22. Mammaliicoccus sciuri 19428wE1_BL01
23. Mammaliicoccus sciuri ACT.1
24. Microbacterium paludicola 19428wA4_P1012
25. Micrococcus aloeverae 19428wE3_DK2
26. Micrococcus yunnanensis 19428wG4_IOV6
27. Muribacter muris 19428wC3_WT12
28. Muribacter muris 7_18CXCR221ANO_S7
29. Neisseria sp. 19428wB4_WF04
30. Parabacteroides goldsteinii 19428wG3_P14
31. Pasteurella sp. 19428wF3_WM03
32. Proteus mirabilis 19428wB5_irhom_Sw
33. Providencia alcalifaciens WMus003.1
34. Rothia nasimurium 19428wA5_irhom_31
35. Sanguibacter inulinus DSM100099.1
36. Shigella flexneri 19428wH2_1568
37. Staphylococcus arlettae 19428wH1_IOV5
38. Staphylococcus aureus 19428wD1_P36
39. Staphylococcus aureus 4_5BalbC4O2_S4
40. Staphylococcus aureus STF.1
41. Staphylococcus capitis GW2.1
42. Staphylococcus saprophyticus 19428wB1_WM06
43. Staphylococcus warneri 19428wF1_P912
44. Staphylococcus xylosus 19428wA1_WT6
45. Streptococcus acidominimus 19428wB2_HT4
46. Streptococcus acidominimus 6_8CXCR23O2_S6
47. Streptococcus cuniculi 19428wD2_WM131
48. Streptococcus danieliae 1_1BalbC1O2_S1
49. Streptococcus danieliae STR.1
50. Streptococcus sp. 19428wA2_WM07
51. Streptococcus sp. 19428wC2_LYSM12
52. Streptococcus sp. 19428wD3_AN2
from a total of 52 genomes
Available tools:
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PROKKA Annotation
NCBI Annotation
BLAST Against Genome
Genome Info
Taxon Description
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PROKKA Genome Annotation:
contigs: 237
bases: 5,139,722 bps
CDS: 4,826
rRNA: 10
Repeat region:
tmRNA: 1
tRNA: 89
misc RNA:
Total features: 4,926
Total number of protein coding genes annotated/found:
4,826
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Items 21 - 40
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of 242 pages
Molecule ^
PID/GenBank ID *
Sequences
Size (NA/AA) ^
Range ^
Gene Product Name
SEQF5015|JADGKR010000010.1
SEQF5015_00021
Genome Viewer
NA
AA
1365/455
19739-18375
Pyrimidine/purine nucleotide 5'-monophosphate nucleosidase
SEQF5015|JADGKR010000010.1
SEQF5015_00022
Genome Viewer
NA
AA
849/283
20699-19851
NADPH-dependent 7-cyano-7-deazaguanine reductase
SEQF5015|JADGKR010000010.1
SEQF5015_00023
Genome Viewer
NA
AA
546/182
20767-21312
Protein Syd
SEQF5015|JADGKR010000010.1
SEQF5015_00024
Genome Viewer
NA
AA
330/110
21934-22263
putative protein YqcC
SEQF5015|JADGKR010000010.1
SEQF5015_00025
Genome Viewer
NA
AA
783/261
22263-23045
tRNA pseudouridine synthase C
SEQF5015|JADGKR010000010.1
SEQF5015_00026
Genome Viewer
NA
AA
450/150
23063-23512
putative protein
SEQF5015|JADGKR010000010.1
SEQF5015_00027
Genome Viewer
NA
AA
981/327
23947-24927
putative glucarate transporter
SEQF5015|JADGKR010000010.1
SEQF5015_00028
Genome Viewer
NA
AA
360/120
24941-25300
putative glucarate transporter
SEQF5015|JADGKR010000010.1
SEQF5015_00029
Genome Viewer
NA
AA
1341/447
25302-26642
Glucarate dehydratase-related protein
SEQF5015|JADGKR010000010.1
SEQF5015_00030
Genome Viewer
NA
AA
1341/447
26663-28003
Glucarate dehydratase
SEQF5015|JADGKR010000010.1
SEQF5015_00031
Genome Viewer
NA
AA
2757/919
30991-28235
Signal transduction histidine-protein kinase BarA
SEQF5015|JADGKR010000010.1
SEQF5015_00032
Genome Viewer
NA
AA
1302/434
31048-32349
23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
SEQF5015|JADGKR010000010.1
SEQF5015_00033
Genome Viewer
NA
AA
2235/745
32397-34631
GTP pyrophosphokinase
SEQF5015|JADGKR010000010.1
SEQF5015_00034
Genome Viewer
NA
AA
249/83
34709-34957
Antitoxin MazE
SEQF5015|JADGKR010000010.1
SEQF5015_00035
Genome Viewer
NA
AA
336/112
34957-35292
Endoribonuclease toxin MazF
SEQF5015|JADGKR010000010.1
SEQF5015_00036
Genome Viewer
NA
AA
792/264
35363-36154
Nucleoside triphosphate pyrophosphohydrolase
SEQF5015|JADGKR010000010.1
SEQF5015_00037
Genome Viewer
NA
AA
1638/546
36382-38019
CTP synthase
SEQF5015|JADGKR010000010.1
SEQF5015_00038
Genome Viewer
NA
AA
1299/433
38107-39405
Enolase
SEQF5015|JADGKR010000010.1
SEQF5015_00039
Genome Viewer
NA
AA
873/291
40337-39465
hypothetical protein
SEQF5015|JADGKR010000010.1
SEQF5015_00040
Genome Viewer
NA
AA
141/47
40491-40351
putative protein YqcG
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Items 21 - 40
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Copyright 2020 Forsyth Institute
Page last updated: July 7, 2021 08:39:35
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